☰ Navigation Tabs
5'-R(*UP*AP*GP*CP*UP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3'
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other CANONICAL A-FORM RNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.51 50.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.3 α = 110.5 b = 28.9 β = 96.9 c = 28.9 γ = 96.9
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 15 88.4 0.099 12.6 2.7 23758
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.16 1.17 75.7 0.54 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS FREE R CANONICAL A-FORM RNA 1.16 15 23758 23758 2425 88.4 0.1255 0.1236 0.122 0.1803 THIN SHELL
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 11 739
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.098 s_similar_dist 0.039 s_similar_adp_cmpnt 0.033 s_from_restr_planes 0.032 s_angle_d 0.019 s_non_zero_chiral_vol 0.01 s_bond_d 0.007 s_anti_bump_dis_restr 0.007 s_rigid_bond_adp_cmpnt 0.005 s_zero_chiral_vol
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 586 Solvent Atoms 155 Heterogen Atoms 2
Software Software Software Name Purpose CCP4 model building SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing