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D(GGCCAATTGG) COMPLEXED WITH DAPI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 431D BD0006 USED AS STARTING MODEL FOR REFINEMENT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 289 pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 289.0K
Crystal Properties Matthews coefficient Solvent content 1.93 36.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 25.616 α = 90 b = 36.563 β = 90 c = 52.961 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH 1997-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 10 97.1 0.073 13.78 5.9 4106 4106
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.89 1.93 95.1 0.291 5.55 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION NONE BD0006 USED AS STARTING MODEL FOR REFINEMENT 1.89 10 4106 3562 97.1 0.192 0.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 512
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.091 s_non_zero_chiral_vol 0.082 s_similar_adp_cmpnt 0.038 s_angle_d 0.029 s_similar_dist 0.023 s_bond_d 0.013 s_anti_bump_dis_restr 0.002 s_zero_chiral_vol s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 410 Solvent Atoms 81 Heterogen Atoms 21
Software Software Software Name Purpose SHELXL refinement DENZO data reduction SCALEPACK data scaling