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Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpMFE1) In Apo Form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X58 PDB ENTRY 2X58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 100MM MES PH 6.0, 150MM AMMONIUM SULPHATE, 15% W/V PEG4000
Crystal Properties Matthews coefficient Solvent content 2.8 55.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.22 α = 90 b = 125.68 β = 90 c = 226.43 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 44 86.8 0.13 8.9 5.5 56678
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 73.6 0.22 5.4 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2X58 2.5 100 53526 2874 86.18 0.2324 0.23004 0.2265 0.27673 0.2717 RANDOM 29.962
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -2.62 2.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.658 r_dihedral_angle_3_deg 19.013 r_dihedral_angle_4_deg 17.982 r_scangle_it 6.142 r_dihedral_angle_1_deg 5.977 r_scbond_it 3.294 r_mcangle_it 1.807 r_angle_refined_deg 1.621 r_mcbond_it 0.865 r_chiral_restr 0.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.658 r_dihedral_angle_3_deg 19.013 r_dihedral_angle_4_deg 17.982 r_scangle_it 6.142 r_dihedral_angle_1_deg 5.977 r_scbond_it 3.294 r_mcangle_it 1.807 r_angle_refined_deg 1.621 r_mcbond_it 0.865 r_chiral_restr 0.115 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11092 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing