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THERMOASCUS GH61 ISOZYME A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2YET PDB ENTRY 2YET
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 25% PEG3350, 0.1M BISTRIS PH 5.5, 0.2 M AMMONIUM ACETATE AS RESERVOIR. AFTERWARDS THE CRYSTAL WAS SOAKED IN A SOLUTION CONSISTING OF RESERVOIR TO WHICH CU(NO3)2 HAD BEEN ADDED TO A FINAL CONCENTRATION OF 10 MM
Crystal Properties Matthews coefficient Solvent content 2.23 44.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.5 α = 90 b = 87.3 β = 104.7 c = 37.3 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SX-165 MULTILAYER MIRROR, CURVED TO FOCUS IN THE VERTICAL 2011-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 30 93.2 0.04 22.3 2.5 106535 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.28 83.2 0.14 6 1.82
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2YET 1.25 27.81 53066 2793 100 0.1563 0.15511 0.1506 0.17925 0.1752 RANDOM 18.293
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 0.17 -0.07 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.079 r_dihedral_angle_3_deg 11.854 r_dihedral_angle_4_deg 8.443 r_dihedral_angle_1_deg 6.244 r_scangle_it 2.695 r_scbond_it 1.898 r_mcangle_it 1.388 r_angle_refined_deg 1.327 r_mcbond_it 0.858 r_rigid_bond_restr 0.518
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.079 r_dihedral_angle_3_deg 11.854 r_dihedral_angle_4_deg 8.443 r_dihedral_angle_1_deg 6.244 r_scangle_it 2.695 r_scbond_it 1.898 r_mcangle_it 1.388 r_angle_refined_deg 1.327 r_mcbond_it 0.858 r_rigid_bond_restr 0.518 r_chiral_restr 0.091 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1724 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing