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Crystal structure of EphB1
Crystallization Crystal Properties Matthews coefficient Solvent content 1.88 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 195.98 α = 90 b = 195.98 β = 90 c = 60.242 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2009-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14 ESRF ID14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 49.11 100 0.15 8.3 5.2 89433 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.6 2.8 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 15 84523 4536 99.83 0.18982 0.18835 0.2025 0.21669 0.2263 RANDOM 28.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 14.85 14.85 -29.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.27 r_dihedral_angle_4_deg 21.709 r_dihedral_angle_3_deg 15.081 r_dihedral_angle_1_deg 5.462 r_angle_refined_deg 1.301 r_angle_other_deg 1.146 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.27 r_dihedral_angle_4_deg 21.709 r_dihedral_angle_3_deg 15.081 r_dihedral_angle_1_deg 5.462 r_angle_refined_deg 1.301 r_angle_other_deg 1.146 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18019 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing