☰ Navigation Tabs
Native structure of Farnesyl Pyrophosphate Synthase from Pseudomonas aeruginosa PA01.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LJI PDB ENTRY 3LJI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 25% PEG3350, 0.2 M NAF, 0.1 M BISTRISPROPANE PH 6.5
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.18 α = 90 b = 98.63 β = 90 c = 131.07 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 65.54 99.5 0.1 7.2 3.7 78917 2 14.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 99.4 0.36 3.4 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3LJI 1.55 25.84 74536 3954 99.17 0.15362 0.15099 0.1555 0.20378 0.2144 RANDOM 22.379
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.51 3.78 -2.27
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 43.658 r_dihedral_angle_2_deg 32.922 r_dihedral_angle_4_deg 21.172 r_sphericity_bonded 17.454 r_dihedral_angle_3_deg 13.41 r_rigid_bond_restr 6.72 r_dihedral_angle_1_deg 4.9 r_angle_refined_deg 1.608 r_angle_other_deg 1.176 r_symmetry_vdw_refined 0.268
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 43.658 r_dihedral_angle_2_deg 32.922 r_dihedral_angle_4_deg 21.172 r_sphericity_bonded 17.454 r_dihedral_angle_3_deg 13.41 r_rigid_bond_restr 6.72 r_dihedral_angle_1_deg 4.9 r_angle_refined_deg 1.608 r_angle_other_deg 1.176 r_symmetry_vdw_refined 0.268 r_nbd_refined 0.263 r_nbd_other 0.215 r_symmetry_vdw_other 0.198 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.156 r_nbtor_other 0.103 r_chiral_restr 0.094 r_symmetry_hbond_refined 0.059 r_xyhbond_nbd_other 0.052 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4095 Nucleic Acid Atoms Solvent Atoms 559 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing