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Neutron and X-ray joint refined structure of PcCel45A with cellopentaose at 298K.
NEUTRON DIFFRACTION - X-RAY DIFFRACTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 60% 3-methyl-1,5-pentanediol, 50mM Tris-HCl, 2.5mM Cellopentaose, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.43 49.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.478 α = 90 b = 58.635 β = 90 c = 64.744 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 neutron 298 STORAGE PHOSPHORS IBIX (BL03), J-PARC 2014-05-11 L LAUE 2 1 x-ray 298 CCD ADSC QUANTUM 315r 2014-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SPALLATION SOURCE J-PARC MLF BEAMLINE BL-03 2.5-5.4 JPARC MLF BL-03 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 37.8 94.1 0.26 3.5 4.3 25651 2 0.99 50 98.5 0.073 110 16.3 97541
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 0.482 1.3 2.2 2 0.99 1.01 0.341 5.2 5.9
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B NEUTRON DIFFRACTION 1.518 19.685 25624 524 91.54 0.2192 0.2184 0.2597 X-RAY DIFFRACTION 0.99 37.757 1.52 97472 1969 98.46 0.1339 0.1338 0.1339 0.1423 0.1433 28.7186
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 22.928 f_angle_d 1.238 f_chiral_restr 0.08 f_bond_d 0.008 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1269 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms 56
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing PHENIX refinement STARGazer data reduction STARGazer data scaling