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Crystal structure of PirB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 298 20mM Tris, 300mM NaCl, 20% 1,4-butanediol, 0.1M Na-acetate, 15% 2,3-butanediol, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.22 44.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.897 α = 90 b = 128.618 β = 90 c = 117.104 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1.0000 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.7 0.034 24.8 4.7 99968 99668 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 99.3 0.509 2.5 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 26.25 100047 94329 4891 99.17 0.15045 0.15045 0.14889 0.1619 0.18046 0.1903 RANDOM 18.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.1 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.209 r_dihedral_angle_4_deg 16.019 r_dihedral_angle_3_deg 12.096 r_long_range_B_refined 7.093 r_long_range_B_other 6.67 r_dihedral_angle_1_deg 6.287 r_scangle_other 4.465 r_mcangle_it 3.106 r_mcangle_other 3.105 r_scbond_it 2.851
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.209 r_dihedral_angle_4_deg 16.019 r_dihedral_angle_3_deg 12.096 r_long_range_B_refined 7.093 r_long_range_B_other 6.67 r_dihedral_angle_1_deg 6.287 r_scangle_other 4.465 r_mcangle_it 3.106 r_mcangle_other 3.105 r_scbond_it 2.851 r_scbond_other 2.85 r_mcbond_it 1.943 r_mcbond_other 1.942 r_angle_refined_deg 1.731 r_angle_other_deg 0.87 r_chiral_restr 0.111 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6854 Nucleic Acid Atoms Solvent Atoms 995 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling