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Crystal structure of aeromonas sobria serine protease (ASP) and the chaperone (ORF2) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HJR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 7.5% PEG 3000, 0.05M HEPES, 0.05M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.15 42.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.062 α = 90 b = 152.062 β = 90 c = 51.625 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2013-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 50 99.2 0.088 21 6.3 130476
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.43 97.9 0.381 2.5 6439
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3HJR 1.41 28.74 130244 6544 98.84 0.1877 0.1867 0.1852 0.2069 0.2057 RANDOM 16.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.29 -0.58 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.402 r_dihedral_angle_4_deg 17.571 r_dihedral_angle_3_deg 12.537 r_dihedral_angle_1_deg 6.088 r_scangle_it 3.161 r_scbond_it 2.109 r_mcangle_it 1.33 r_angle_refined_deg 1.148 r_rigid_bond_restr 0.866 r_mcbond_it 0.791
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.402 r_dihedral_angle_4_deg 17.571 r_dihedral_angle_3_deg 12.537 r_dihedral_angle_1_deg 6.088 r_scangle_it 3.161 r_scbond_it 2.109 r_mcangle_it 1.33 r_angle_refined_deg 1.148 r_rigid_bond_restr 0.866 r_mcbond_it 0.791 r_chiral_restr 0.075 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5208 Nucleic Acid Atoms Solvent Atoms 392 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling