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Crystal Structure of the Novel Haloalkane Dehalogenase DatA from Agrobacterium tumefaciens C58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.6 293 0.1M CHES, 1.0M potassium sodium tartrate, 0.2M lithium sulfate, 0.01M barium chloride, pH 8.6, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.45 49.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.7 α = 90 b = 123.7 β = 90 c = 88.07 γ = 90
Symmetry Space Group P 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2009-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0000 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 75138
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 44.03 71353 3783 99.8 0.1932 0.19157 0.2012 0.2231 0.2273 RANDOM 24.785
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.965 r_dihedral_angle_4_deg 18.371 r_dihedral_angle_3_deg 12.785 r_dihedral_angle_1_deg 6.307 r_long_range_B_refined 5.552 r_long_range_B_other 5.552 r_scangle_other 4.331 r_scbond_it 2.945 r_scbond_other 2.945 r_mcangle_it 2.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.965 r_dihedral_angle_4_deg 18.371 r_dihedral_angle_3_deg 12.785 r_dihedral_angle_1_deg 6.307 r_long_range_B_refined 5.552 r_long_range_B_other 5.552 r_scangle_other 4.331 r_scbond_it 2.945 r_scbond_other 2.945 r_mcangle_it 2.934 r_mcangle_other 2.934 r_mcbond_it 2.254 r_mcbond_other 2.253 r_angle_refined_deg 1.97 r_angle_other_deg 0.937 r_chiral_restr 0.122 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4664 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 51
Software Software Software Name Purpose ADSC data collection REFMAC refinement