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N-terminal domain of Mycobacterium tuberculosis ClpC1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y1Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 0.2M ammonium acetate, 20% polyethylene glycol 3350, 0.025M magnesium formate, pH 7.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.4 48.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.37 α = 90 b = 57.15 β = 90 c = 65.02 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL PSI PILATUS 6M 2011-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 50 33696
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2Y1Q 1.37 30 31935 1709 99.3 0.1455 0.1434 0.1386 0.1821 0.1784 RANDOM 22.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.57 0.26
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.16 r_dihedral_angle_2_deg 39.74 r_sphericity_bonded 18.796 r_dihedral_angle_4_deg 15.831 r_dihedral_angle_3_deg 13.324 r_dihedral_angle_1_deg 4.9 r_rigid_bond_restr 3.451 r_angle_refined_deg 1.556 r_chiral_restr 0.089 r_bond_refined_d 0.013
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.16 r_dihedral_angle_2_deg 39.74 r_sphericity_bonded 18.796 r_dihedral_angle_4_deg 15.831 r_dihedral_angle_3_deg 13.324 r_dihedral_angle_1_deg 4.9 r_rigid_bond_restr 3.451 r_angle_refined_deg 1.556 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1144 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 3
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling