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Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 100mM trisodium citrate-HCl, 1.3M ammonium sulfate, 210mM potassium sodium tartrate, 50mM imidazole, 400mM NaCl, 10mM MgCl2, 0.5mM 5'-O-[N-(L-seryl)sulfamoyl]adenosine, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.5 72.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 272.817 α = 90 b = 272.817 β = 90 c = 272.817 γ = 90
Symmetry Space Group I 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315r mirrors 2009-11-27 M SINGLE WAVELENGTH 2 1 x-ray 90 CCD ADSC QUANTUM 270 mirrors 2009-11-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.97848 Photon Factory BL-5A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.07186, 1.07227, 1.05404 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.095 50 99.9 0.094 0.094 28.4 15 31746 31714 -2 102.66
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 3.1 3.21 100 0.847 0.847 3.49 14.6 3126
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD 3.095 35.823 1.33 31729 31040 1556 97.83 0.2064 0.2036 0.2036 0.2603 0.2587 random 128.4284
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.634 f_angle_d 1.253 f_chiral_restr 0.082 f_bond_d 0.009 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4363 Nucleic Acid Atoms 2090 Solvent Atoms Heterogen Atoms 85
Software Software Software Name Purpose ADSC data collection SHARP phasing PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling