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Crystal structure of the HypC-HypD complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z2C 2Z2C, 2Z1D experimental model PDB 2Z1D 2Z2C, 2Z1D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.7 293 1.4M (NH4)3 citrate/citric acid(pH 4.5-4.7), 0.7% 2-methyl-2,4-pentandiol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.68 73.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.179 α = 90 b = 181.179 β = 90 c = 49.433 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 50 100 0.077 23.1 6.7 30506 30506 -3 45.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.64 100 0.482 3.8 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2Z2C, 2Z1D 2.55 45.3 30494 1545 99.8 0.17 0.17 0.166 0.212 0.2066 RANDOM 50
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.74 8.74 -17.49
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.7 c_scangle_it 11.52 c_scbond_it 9.96 c_mcangle_it 7.55 c_improper_angle_d 7.07 c_mcbond_it 6.13 c_angle_deg 1.7 c_bond_d 0.014 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.7 c_scangle_it 11.52 c_scbond_it 9.96 c_mcangle_it 7.55 c_improper_angle_d 7.07 c_mcbond_it 6.13 c_angle_deg 1.7 c_bond_d 0.014 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3430 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 99
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling