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Crystal structure of xeg-xyloglucan
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VL8
Crystallization Crystal Properties Matthews coefficient Solvent content 2.07 40.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.757 α = 90 b = 79.283 β = 90 c = 80.374 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 270 2010-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 120607
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3VL8 1.2 20 114328 6038 95.82 0.12881 0.12701 0.16288 0.1778 RANDOM 10.303
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 -0.29 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.929 r_sphericity_free 20.953 r_dihedral_angle_3_deg 10.202 r_dihedral_angle_1_deg 7.205 r_sphericity_bonded 6.918 r_dihedral_angle_4_deg 5.552 r_rigid_bond_restr 3.292 r_angle_other_deg 3.02 r_angle_refined_deg 1.657 r_chiral_restr 0.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.929 r_sphericity_free 20.953 r_dihedral_angle_3_deg 10.202 r_dihedral_angle_1_deg 7.205 r_sphericity_bonded 6.918 r_dihedral_angle_4_deg 5.552 r_rigid_bond_restr 3.292 r_angle_other_deg 3.02 r_angle_refined_deg 1.657 r_chiral_restr 0.338 r_bond_refined_d 0.017 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3326 Nucleic Acid Atoms Solvent Atoms 701 Heterogen Atoms 117
Software Software Software Name Purpose REFMAC refinement