3VG8
Crystal structure of hypothetical protein TTHB210 from Thermus thermophilus HB8
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
---|---|---|---|---|
ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.8 | 293 | 0.9M K/Na tartrate, 0.1M Tris-HCl, 40mM magnesium chloride, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
2 | VAPOR DIFFUSION, HANGING DROP | 8.8 | 293 | 0.95M K/Na tartrate, 0.1M Tris-HCl, 45mM magnesium chloride, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 154.977 | α = 90 |
b = 100.16 | β = 131.19 |
c = 106.366 | γ = 90 |
Symmetry | |
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Space Group | C 1 2 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | RAYONIX MX-225 | vertically bent two dimensional focusing mirror coated in Rhodium | 2007-09-29 | M | MAD | |||||
2 | 2 | x-ray | 100 | CCD | RAYONIX MX-225 | vertically bent two dimensional focusing mirror coated in Rhodium | 2007-10-06 | M | MAD |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | SPRING-8 BEAMLINE BL26B2 | 0.9789, 0.9, 0.9795 | SPring-8 | BL26B2 |
2 | SYNCHROTRON | SPRING-8 BEAMLINE BL26B2 | 0.9789, 0.9, 0.9795 | SPring-8 | BL26B2 |
Data Collection
Overall | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1,2 | 2.2 | 50 | 99.4 | 0.061 | 40.2 | 5.2 | 61889 | 22.1 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | MAD | THROUGHOUT | 2.2 | 46.11 | 61889 | 6258 | 99.5 | 0.207 | 0.201 | 0.201 | 0.252 | RANDOM | 40.2 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
4.25 | 5.96 | -4.27 | 0.01 |
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
c_dihedral_angle_d | 25 |
c_scangle_it | 6.79 |
c_scbond_it | 5.67 |
c_mcangle_it | 4.66 |
c_mcbond_it | 3.5 |
c_angle_deg | 1.6 |
c_improper_angle_d | 1.01 |
c_bond_d | 0.009 |
c_bond_d_na | |
c_bond_d_prot |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 8469 |
Nucleic Acid Atoms | |
Solvent Atoms | 424 |
Heterogen Atoms |
Software
Software | |
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Software Name | Purpose |
BSS | data collection |
SOLVE | phasing |
CNS | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |