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Human PARP14 (ARTD8, BAL2) - macro domains 1 and 2 in complex with adenosine-5-diphosphoribose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3Q6Z PDB ENTRIES 3Q6Z AND 3Q71 experimental model PDB 3Q71 PDB ENTRIES 3Q6Z AND 3Q71
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 20% PEG3350, 0.2M SODIUM-THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.26 45.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.62 α = 90 b = 59.94 β = 90 c = 144.34 γ = 90
Symmetry Space Group P 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.93928 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.9 0.175 0.132 10.1 8.3 10514 10514
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.87 99.7 0.805 0.652 2.3 7.6 750
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 3Q6Z AND 3Q71 2.8 46.62 9462 9462 1052 100 0.23787 0.23787 0.23277 0.2308 0.28305 0.2846 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.57 -3.36 1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.331 r_dihedral_angle_3_deg 20.755 r_dihedral_angle_4_deg 19.068 r_dihedral_angle_1_deg 6.591 r_scangle_it 2.587 r_angle_refined_deg 1.473 r_scbond_it 1.445 r_mcangle_it 0.943 r_angle_other_deg 0.874 r_mcbond_it 0.484
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.331 r_dihedral_angle_3_deg 20.755 r_dihedral_angle_4_deg 19.068 r_dihedral_angle_1_deg 6.591 r_scangle_it 2.587 r_angle_refined_deg 1.473 r_scbond_it 1.445 r_mcangle_it 0.943 r_angle_other_deg 0.874 r_mcbond_it 0.484 r_chiral_restr 0.071 r_mcbond_other 0.071 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2873 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 36
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling