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Crystal structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase at 2.25 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 100mM HEPES (pH 7.5), 200mM Calcium acetate, 40% (v/v) PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.06 59.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.51 α = 90 b = 208.69 β = 90 c = 36.9 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 19.67 97.2 0.057 10.7 2.5 37768 37768
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.37 98.7 0.533 0.533 0.669 0.396 1.4 2.5 5533
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.25 19.67 32182 1685 87.33 0.2252 0.2232 0.2298 0.2629 0.2695 RANDOM 13.0229
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.92 -3.04 1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.247 r_dihedral_angle_4_deg 16.618 r_dihedral_angle_3_deg 14.915 r_scangle_it 8.772 r_scbond_it 5.216 r_dihedral_angle_1_deg 4.606 r_mcangle_it 3.229 r_rigid_bond_restr 2.472 r_mcbond_it 1.772 r_angle_refined_deg 1.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.247 r_dihedral_angle_4_deg 16.618 r_dihedral_angle_3_deg 14.915 r_scangle_it 8.772 r_scbond_it 5.216 r_dihedral_angle_1_deg 4.606 r_mcangle_it 3.229 r_rigid_bond_restr 2.472 r_mcbond_it 1.772 r_angle_refined_deg 1.224 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4015 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 8
Software Software Software Name Purpose SCALA data scaling SHARP phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction