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Crystal structure of a UvrB dimer-DNA complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2D7D Protein co-ordinates from 2D7D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 289 Crystals were grown from 0.1M MES ph 6.5, 12% PEG 20,0000, Microbatch, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.47 50.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.94 α = 90 b = 100.31 β = 90 c = 163.63 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Mirrors 2006-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 19.91 99.4 0.149 9.3 7.3 25439 2 2 89.37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.33 100 0.761 2.72 7.5 13804
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Protein co-ordinates from 2D7D 3.25 19.91 25439 25392 1297 99.98 0.1817 0.1817 0.1797 0.1925 0.2187 0.2381 RANDOM 68.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -10.2322 12.1259 -1.8937
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.97 t_dihedral_angle_d 20.95 t_chiral_improper_torsion 20.95 t_ideal_dist_contact 20.95 t_omega_torsion 2.56 t_angle_deg 1.22 t_gen_planes 0.0131 t_bond_d 0.01 t_it 0.01 t_trig_c_planes 0.0076
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8526 Nucleic Acid Atoms 254 Solvent Atoms Heterogen Atoms 35
Software Software Software Name Purpose DNA data collection PHASER phasing BUSTER refinement XDS data reduction XSCALE data scaling