X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3SO8pdb entry 3SO8

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529125% PEG3350, 0.2M sodium chloride, 0.1M HEPES, pH 7.5, vapor diffusion, sitting drop, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.754.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.598α = 90
b = 98.354β = 90
c = 99.358γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
XDSdataset1100
11x-rayCCDADSC QUANTUM 3152011-07-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97911APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8549.1899.960.1215.00717.111867618636
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.9599.970.887.132689

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 3SO81.8539.861863693599.860.18830.18660.2215RANDOM20.7861
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.69-0.880.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.704
r_dihedral_angle_4_deg15.545
r_dihedral_angle_3_deg11.902
r_dihedral_angle_1_deg5.493
r_scangle_it3.632
r_scbond_it2.278
r_angle_refined_deg1.476
r_mcangle_it1.401
r_angle_other_deg1.013
r_mcbond_it0.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.704
r_dihedral_angle_4_deg15.545
r_dihedral_angle_3_deg11.902
r_dihedral_angle_1_deg5.493
r_scangle_it3.632
r_scbond_it2.278
r_angle_refined_deg1.476
r_mcangle_it1.401
r_angle_other_deg1.013
r_mcbond_it0.81
r_mcbond_other0.256
r_chiral_restr0.102
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1360
Nucleic Acid Atoms
Solvent Atoms117
Heterogen Atoms5

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction