☰ Navigation Tabs
Crystal Structure of OTEMO complex with FAD and NADP (form 4)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UOY PDB ENTRY 3UOY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 22% PEG3350, 0.1 M sodium/potassium phosphate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.34 47.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.837 α = 90 b = 94.394 β = 102.38 c = 93.135 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2010-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.453 90.968 96.6 0.097 9.2 2.7 39964
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.453 2.54 98.2 0.349 2.6 4025
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3UOY 2.453 48.353 39933 2017 96.22 0.1874 0.1848 0.1844 0.2361 0.2338 RANDOM 25.9167
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.64 -0.28 3.69 -2.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.016 r_dihedral_angle_4_deg 18.954 r_dihedral_angle_3_deg 17.401 r_dihedral_angle_1_deg 7.189 r_scangle_it 3.878 r_scbond_it 2.471 r_angle_refined_deg 1.842 r_mcangle_it 1.423 r_mcbond_it 0.77 r_chiral_restr 0.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.016 r_dihedral_angle_4_deg 18.954 r_dihedral_angle_3_deg 17.401 r_dihedral_angle_1_deg 7.189 r_scangle_it 3.878 r_scbond_it 2.471 r_angle_refined_deg 1.842 r_mcangle_it 1.423 r_mcbond_it 0.77 r_chiral_restr 0.124 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8491 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 202
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing