☰ Navigation Tabs
Mycobacterium tuberculosis bacterioferritin, BfrA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 1.7 M NaCl and 100 mM Tris-HCl (pH 8.0), VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.99 58.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.962 α = 89.95 b = 123.225 β = 89.95 c = 175.452 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.9795 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 89.4 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 32.56 682257 35900 88.36 0.15055 0.14825 0.1615 0.19442 0.1613 RANDOM 25.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.34 -2.83 -10.7 -1.42 1.9 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.973 r_dihedral_angle_4_deg 19.275 r_dihedral_angle_3_deg 17.23 r_dihedral_angle_1_deg 7.178 r_scangle_it 6.005 r_scbond_it 4.26 r_angle_refined_deg 2.595 r_mcangle_it 2.275 r_mcbond_it 1.526 r_chiral_restr 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.973 r_dihedral_angle_4_deg 19.275 r_dihedral_angle_3_deg 17.23 r_dihedral_angle_1_deg 7.178 r_scangle_it 6.005 r_scbond_it 4.26 r_angle_refined_deg 2.595 r_mcangle_it 2.275 r_mcbond_it 1.526 r_chiral_restr 0.18 r_bond_refined_d 0.03 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 61672 Nucleic Acid Atoms Solvent Atoms 4856 Heterogen Atoms 1032
Software Software Software Name Purpose ADSC data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling