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Crystal Structure of the complex of PGRP-S with lauric acid at 2.2 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C2X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 298 10% PEG 3350, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.43 49.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89 α = 90 b = 101.61 β = 90 c = 163.39 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARRESEARCH Mirror 2011-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 86.3 92.2 0.086 9.8 33252 34.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 92.1 0.455 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3C2X 2.2 86.29 33252 33252 1774 92.22 0.2324 0.227 0.2273 0.2586 0.2558 RANDOM 41.4233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.02 -3.26 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.675 r_dihedral_angle_4_deg 16.427 r_dihedral_angle_3_deg 16.037 r_dihedral_angle_1_deg 7.703 r_scangle_it 4.828 r_scbond_it 3.128 r_mcangle_it 2.156 r_angle_refined_deg 1.886 r_mcbond_it 1.222 r_chiral_restr 0.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.675 r_dihedral_angle_4_deg 16.427 r_dihedral_angle_3_deg 16.037 r_dihedral_angle_1_deg 7.703 r_scangle_it 4.828 r_scbond_it 3.128 r_mcangle_it 2.156 r_angle_refined_deg 1.886 r_mcbond_it 1.222 r_chiral_restr 0.131 r_bond_refined_d 0.023 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5347 Nucleic Acid Atoms Solvent Atoms 619 Heterogen Atoms 20
Software Software Software Name Purpose DENZO data reduction AMoRE phasing REFMAC refinement AUTOMAR data reduction SCALEPACK data scaling