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Crystal structure of a RNA binding domain of poly-U binding splicing factor 60KDa (PUF60) from Homo sapiens at 1.23 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 2.4 M ammonium sulfate, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.87 34.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.64 α = 90 b = 49.995 β = 90 c = 55.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2011-09-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9537,0.9796,0.9794 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 29.553 99.8 0.08 8.3 3.4 30048 30048
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.23 1.26 100 0.612 0.612 1.3 3.4 2198
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.23 29.553 29999 1520 99.66 0.1355 0.1341 0.1452 0.1601 0.1706 RANDOM 16.2176
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.41 1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.323 r_dihedral_angle_4_deg 13.134 r_dihedral_angle_3_deg 11.921 r_sphericity_free 11.822 r_scangle_it 7.405 r_sphericity_bonded 5.649 r_scbond_it 5.408 r_dihedral_angle_1_deg 5.155 r_mcangle_it 3.855 r_mcbond_it 2.751
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.323 r_dihedral_angle_4_deg 13.134 r_dihedral_angle_3_deg 11.921 r_sphericity_free 11.822 r_scangle_it 7.405 r_sphericity_bonded 5.649 r_scbond_it 5.408 r_dihedral_angle_1_deg 5.155 r_mcangle_it 3.855 r_mcbond_it 2.751 r_rigid_bond_restr 2.331 r_angle_refined_deg 1.506 r_mcbond_other 1.504 r_angle_other_deg 0.926 r_chiral_restr 0.108 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 932 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms 10
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SOLVE phasing SCALA data scaling REFMAC refinement MOSFLM data reduction