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Crystal Structure of BACE with Compound 8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 protein in sodium borate, pH 8.5, reservoir: 30% PEG200, 0.1 M sodium acetate, pH 5.2-5.4, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.12 42.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.771 α = 90 b = 103.571 β = 90 c = 99.048 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2008-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 37.56 99.4 0.059 14.7 4.7 28721
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.01 94.8 0.439 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY REFINEMENT THROUGHOUT 1.94 37.56 27194 1504 99.5 0.18415 0.181 0.182 0.24295 0.2492 RANDOM 24.313
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.14 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.328 r_dihedral_angle_4_deg 15.807 r_dihedral_angle_3_deg 14.865 r_dihedral_angle_1_deg 8.105 r_scangle_it 5.463 r_scbond_it 3.632 r_mcangle_it 2.362 r_mcbond_it 1.457 r_angle_refined_deg 1.268 r_angle_other_deg 0.757
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.328 r_dihedral_angle_4_deg 15.807 r_dihedral_angle_3_deg 14.865 r_dihedral_angle_1_deg 8.105 r_scangle_it 5.463 r_scbond_it 3.632 r_mcangle_it 2.362 r_mcbond_it 1.457 r_angle_refined_deg 1.268 r_angle_other_deg 0.757 r_mcbond_other 0.458 r_symmetry_vdw_refined 0.179 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.135 r_chiral_restr 0.087 r_gen_planes_refined 0.014 r_bond_refined_d 0.012 r_gen_planes_other 0.001 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3106 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms 36
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction