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Selenium Substituted Human Augmenter of Liver Regeneration
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MBG PDB ENTRY 3MBG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.01 38.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.892 α = 90 b = 76.878 β = 90 c = 63.464 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV 2011-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 16472 15561
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 36.4 0.254 2.43 2 723
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3MBG 1.5 21.53 16472 15561 839 80.83 0.20731 0.2054 0.1977 0.24353 0.235 RANDOM 18.687
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.764 r_dihedral_angle_4_deg 14.551 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 6.187 r_scangle_it 5.046 r_scbond_it 3.472 r_mcangle_it 2.278 r_angle_refined_deg 2.27 r_mcbond_it 1.877 r_chiral_restr 0.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.764 r_dihedral_angle_4_deg 14.551 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 6.187 r_scangle_it 5.046 r_scbond_it 3.472 r_mcangle_it 2.278 r_angle_refined_deg 2.27 r_mcbond_it 1.877 r_chiral_restr 0.234 r_bond_refined_d 0.024 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1049 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 53
Software Software Software Name Purpose StructureStudio data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling