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Crystal structure of a Heterogeneous nuclear ribonucleoprotein L (Hnrpl) from Mus musculus at 1.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.6 277 2.0M NaCl, 10.0% PEG-6000, No Buffer pH 3.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.1 69.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.424 α = 90 b = 127.424 β = 90 c = 80.652 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Vertical focusing mirror; double crystal Si(111) monochromator 2011-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 41.709 100 0.077 0.084 0.025 15.4 10.9 51213 51213
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 100 1.17 1.17 1.281 0.386 0.6 10.9 7342
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 41.709 51174 2597 99.93 0.1777 0.1762 0.1861 0.2041 0.2128 RANDOM 35.6183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.03 -0.06 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.026 r_dihedral_angle_4_deg 17.522 r_dihedral_angle_3_deg 12.681 r_dihedral_angle_1_deg 5.967 r_scangle_it 4.266 r_scbond_it 2.681 r_mcangle_it 1.64 r_angle_refined_deg 1.623 r_angle_other_deg 0.961 r_mcbond_it 0.917
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.026 r_dihedral_angle_4_deg 17.522 r_dihedral_angle_3_deg 12.681 r_dihedral_angle_1_deg 5.967 r_scangle_it 4.266 r_scbond_it 2.681 r_mcangle_it 1.64 r_angle_refined_deg 1.623 r_angle_other_deg 0.961 r_mcbond_it 0.917 r_mcbond_other 0.439 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1588 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 48
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction MOLREP phasing SCALA data scaling REFMAC refinement MOSFLM data reduction