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Bacillus collagen-like protein of anthracis P159S mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R6Q PDB entry 2R6Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.02 295 0.7M ammonium phosphate monobasic, 100mM sodium citrate, pH 5.02, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.5 64.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.152 α = 90 b = 68.152 β = 90 c = 163.645 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 40 96.9 0.168 11.7 11.5 12588 12588 -3 16.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 97.9 0.647 3.2 7.8 617
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2R6Q 2.15 34.08 11957 11957 619 96.91 0.20865 0.20744 0.23395 0.2144 RANDOM 11.618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.38 0.76 -1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.857 r_dihedral_angle_3_deg 10.221 r_dihedral_angle_1_deg 5.793 r_angle_other_deg 4.574 r_scangle_it 3.122 r_scbond_it 1.727 r_mcangle_it 1.405 r_angle_refined_deg 1.222 r_mcbond_it 0.765 r_chiral_restr 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.857 r_dihedral_angle_3_deg 10.221 r_dihedral_angle_1_deg 5.793 r_angle_other_deg 4.574 r_scangle_it 3.122 r_scbond_it 1.727 r_mcangle_it 1.405 r_angle_refined_deg 1.222 r_mcbond_it 0.765 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 950 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling