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Structure of the F413K variant of E. coli KatE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GGE PDB ENTRY 1GGE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 17% PEG3350, 1.6 M lithium chloride, 0.1 M Tris, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.12 41.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.5 α = 90 b = 132.96 β = 109.69 c = 122.03 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2009-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97934 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 35.182 97.2 0.106 9.7 3.7 286682 278239 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.83 89.8 0.458 0.458 1.6 3.3 37423
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GGE 1.74 35.182 278239 278239 14075 97.04 0.1477 0.1477 0.1457 0.1456 0.1849 0.1843 RANDOM 14.151
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.41 -0.09 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.138 r_dihedral_angle_4_deg 14.99 r_dihedral_angle_3_deg 14.335 r_dihedral_angle_1_deg 6.43 r_scangle_it 4.395 r_scbond_it 2.879 r_angle_refined_deg 2.029 r_mcangle_it 1.842 r_mcbond_it 1.15 r_chiral_restr 0.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.138 r_dihedral_angle_4_deg 14.99 r_dihedral_angle_3_deg 14.335 r_dihedral_angle_1_deg 6.43 r_scangle_it 4.395 r_scbond_it 2.879 r_angle_refined_deg 2.029 r_mcangle_it 1.842 r_mcbond_it 1.15 r_chiral_restr 0.186 r_bond_refined_d 0.027 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22956 Nucleic Acid Atoms Solvent Atoms 2856 Heterogen Atoms 172
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MxDC data collection MOSFLM data reduction REFMAC phasing