X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3LH5PDB ENTRY 3LH5

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5293.151.2M AmSO4, 0.1M NaAc pH 5.0, 60mM NaF, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
Crystal Properties
Matthews coefficientSolvent content
2.9958.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.634α = 90
b = 100.634β = 90
c = 182.516γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2010-11-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1.0APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8387.1797.60.08917.085.64791847918
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.83386.90.9761.874.26860

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3LH52.84787.174193041930470996.230.218480.218480.210540.28972RANDOM71.427
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
25.425.4-50.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.948
r_dihedral_angle_3_deg23.344
r_dihedral_angle_4_deg22.697
r_dihedral_angle_1_deg7.908
r_scangle_it2.003
r_angle_refined_deg1.565
r_scbond_it1.195
r_mcangle_it0.906
r_mcbond_it0.485
r_chiral_restr0.104
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.948
r_dihedral_angle_3_deg23.344
r_dihedral_angle_4_deg22.697
r_dihedral_angle_1_deg7.908
r_scangle_it2.003
r_angle_refined_deg1.565
r_scbond_it1.195
r_mcangle_it0.906
r_mcbond_it0.485
r_chiral_restr0.104
r_bond_refined_d0.012
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8532
Nucleic Acid Atoms
Solvent Atoms70
Heterogen Atoms35

Software

Software
Software NamePurpose
SERGUIdata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling