☰ Navigation Tabs
Structure of the 2-methylcitrate synthase (prpC) from Coxiella burnetii
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HWK PDB code 3HWK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 0.2 M NaCl,
20% PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.1 41.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.354 α = 90 b = 82.279 β = 90 c = 145.898 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2011-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.979 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 100 90.7 0.079 12.1 3.7 32406 29397 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 80.7 0.384 2.2 2.5 1580
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB code 3HWK 2.3 32.94 32379 29348 1524 90.64 0.19188 0.18844 0.1996 0.2559 0.2638 RANDOM 24.476
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.34 2.83 -1.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.414 r_dihedral_angle_4_deg 17.463 r_dihedral_angle_3_deg 15.486 r_dihedral_angle_1_deg 5.348 r_scangle_it 1.622 r_angle_refined_deg 1.114 r_scbond_it 1.051 r_angle_other_deg 0.857 r_mcangle_it 0.643 r_mcbond_it 0.337
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.414 r_dihedral_angle_4_deg 17.463 r_dihedral_angle_3_deg 15.486 r_dihedral_angle_1_deg 5.348 r_scangle_it 1.622 r_angle_refined_deg 1.114 r_scbond_it 1.051 r_angle_other_deg 0.857 r_mcangle_it 0.643 r_mcbond_it 0.337 r_mcbond_other 0.072 r_chiral_restr 0.062 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5683 Nucleic Acid Atoms Solvent Atoms 430 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling