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Microcin C7 self immunity protein MccF in complex aspartyl sulfamoyl adenosine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TLA PDB ENTRY 3TLA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 282 10% PEG 8000, 8% ethylene glycol, 0.1 M HEPES, pH 7.5, vapor diffusion, hanging drop, temperature 282K
Crystal Properties Matthews coefficient Solvent content 2 38.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.431 α = 90 b = 85.675 β = 101.31 c = 72.892 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD 2010-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 95.6 0.058 11.2 6 99681
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 85 0.244 5.3 8860
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3TLA 1.501 25 99640 4974 95.33 0.1807 0.1796 0.1781 0.202 0.2004 RANDOM 14.5943
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.27 1.21 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.262 r_dihedral_angle_4_deg 15.233 r_dihedral_angle_3_deg 10.705 r_dihedral_angle_1_deg 5.312 r_scangle_it 1.698 r_scbond_it 1.011 r_angle_refined_deg 0.986 r_angle_other_deg 0.775 r_mcangle_it 0.57 r_mcbond_it 0.276
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.262 r_dihedral_angle_4_deg 15.233 r_dihedral_angle_3_deg 10.705 r_dihedral_angle_1_deg 5.312 r_scangle_it 1.698 r_scbond_it 1.011 r_angle_refined_deg 0.986 r_angle_other_deg 0.775 r_mcangle_it 0.57 r_mcbond_it 0.276 r_chiral_restr 0.067 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5261 Nucleic Acid Atoms Solvent Atoms 864 Heterogen Atoms 62
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction