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factor Xa in complex with D46-5241
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 51.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.466 α = 90 b = 72.412 β = 90 c = 79.074 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IIC confocal mirror 2004-12-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 36.2 99.4 0.042 15.7 3.11 30533 30533 27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 99 0.335 3.1 2.86 2999
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 25 29052 1472 100 0.20482 0.20292 0.192 0.24114 0.2249 RANDOM 30.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.8 -1.13 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.326 r_dihedral_angle_4_deg 18.532 r_dihedral_angle_3_deg 13.753 r_dihedral_angle_1_deg 6.301 r_scangle_it 2.604 r_mcangle_it 2.186 r_scbond_it 1.761 r_angle_refined_deg 1.547 r_mcbond_it 1.328 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.326 r_dihedral_angle_4_deg 18.532 r_dihedral_angle_3_deg 13.753 r_dihedral_angle_1_deg 6.301 r_scangle_it 2.604 r_mcangle_it 2.186 r_scbond_it 1.761 r_angle_refined_deg 1.547 r_mcbond_it 1.328 r_nbtor_refined 0.312 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.162 r_xyhbond_nbd_refined 0.16 r_metal_ion_refined 0.16 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.114 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2185 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 31
Software Software Software Name Purpose manufacturer data collection REFMAC refinement CrystalClear data reduction CrystalClear data scaling REFMAC phasing