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Human Pin1 bound to cis peptidomimetic inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 1.9-2.2 M ammonium sulfate, 1% PEG400 at pH 7.5 in 50 mM HEPES buffer, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.14 60.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.389 α = 90 b = 69.389 β = 90 c = 79.607 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MACSCIENCE DIP100 2004-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 93.2 0.054 26.4 12458 11618 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 84.8 0.476 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 33.19 12432 11618 1187 93.45 0.2277 0.2234 0.2207 0.2648 0.26 RANDOM 33.3096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.34 0.67 1.34 -2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.81 r_dihedral_angle_4_deg 18.301 r_dihedral_angle_3_deg 15.418 r_dihedral_angle_1_deg 6.208 r_scangle_it 2.894 r_scbond_it 1.825 r_angle_refined_deg 1.411 r_mcangle_it 1.288 r_mcbond_it 0.756 r_nbtor_refined 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.81 r_dihedral_angle_4_deg 18.301 r_dihedral_angle_3_deg 15.418 r_dihedral_angle_1_deg 6.208 r_scangle_it 2.894 r_scbond_it 1.825 r_angle_refined_deg 1.411 r_mcangle_it 1.288 r_mcbond_it 0.756 r_nbtor_refined 0.29 r_symmetry_hbond_refined 0.214 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.17 r_symmetry_vdw_refined 0.166 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1164 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 54
Software Software Software Name Purpose PHASER phasing REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALA data scaling