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Selective targeting of disease-relevant protein binding domains by O-phosphorylated natural product derivatives
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZR6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 2.2M Ammonium sulphate, 0.1M HEPES buffer, 1% PEG 400,pH 7.5, vapor diffusion, sitting drop, temperature 277K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.9 57.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.36 α = 90 b = 68.36 β = 90 c = 79.37 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 PIXEL PSI PILATUS 6M 2010-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 59 98.3 42748 42028 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.7 96.9 0.338 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZR6 1.4 19.73 42028 32347 1735 79.82 0.17663 0.17483 0.1784 0.21098 0.215 RANDOM 15.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.728 r_dihedral_angle_4_deg 19.902 r_dihedral_angle_3_deg 12.303 r_dihedral_angle_1_deg 5.907 r_scangle_it 2.679 r_scbond_it 1.743 r_angle_refined_deg 1.146 r_mcangle_it 1.108 r_angle_other_deg 0.758 r_rigid_bond_restr 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.728 r_dihedral_angle_4_deg 19.902 r_dihedral_angle_3_deg 12.303 r_dihedral_angle_1_deg 5.907 r_scangle_it 2.679 r_scbond_it 1.743 r_angle_refined_deg 1.146 r_mcangle_it 1.108 r_angle_other_deg 0.758 r_rigid_bond_restr 0.7 r_mcbond_it 0.648 r_mcbond_other 0.205 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1135 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 51
Software Software Software Name Purpose MAR345 data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling