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Vall from streptomyces hygroscopicus in complex with trehalose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 294 30% PEG4000, 200mM MgCl2, 100mM Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.81 31.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.661 α = 90 b = 45.82 β = 107.36 c = 115.03 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9792 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 39.78 82832
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 39.78 82832 4373 99.01 0.16504 0.16249 0.1656 0.21369 0.2152 RANDOM 31.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01 -0.02 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.745 r_dihedral_angle_4_deg 15.167 r_dihedral_angle_3_deg 14.33 r_sphericity_bonded 14.124 r_rigid_bond_restr 12.621 r_sphericity_free 10.781 r_dihedral_angle_1_deg 6.05 r_angle_refined_deg 1.432 r_angle_other_deg 0.838 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.745 r_dihedral_angle_4_deg 15.167 r_dihedral_angle_3_deg 14.33 r_sphericity_bonded 14.124 r_rigid_bond_restr 12.621 r_sphericity_free 10.781 r_dihedral_angle_1_deg 6.05 r_angle_refined_deg 1.432 r_angle_other_deg 0.838 r_chiral_restr 0.091 r_bond_other_d 0.054 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7175 Nucleic Acid Atoms Solvent Atoms 627 Heterogen Atoms 74
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction SCALA data scaling