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Crystal structure of shwanavidin (F43A) - biotin complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.3 293 1.5M Ammonium Sulfate, 50mM tris, pH 8.3, microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.54 51.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.212 α = 90 b = 63.212 β = 90 c = 65.83 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9736 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.2 21787 21787
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 50 21787 20652 1111 99.07 0.17841 0.17687 0.20762 0.213 RANDOM 25.663
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.63 -0.63 1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.37 r_dihedral_angle_3_deg 10.652 r_dihedral_angle_1_deg 6.52 r_sphericity_free 5.927 r_sphericity_bonded 5.357 r_scangle_it 3.486 r_scbond_it 3.073 r_rigid_bond_restr 2.511 r_mcangle_it 2.007 r_angle_refined_deg 1.589
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.37 r_dihedral_angle_3_deg 10.652 r_dihedral_angle_1_deg 6.52 r_sphericity_free 5.927 r_sphericity_bonded 5.357 r_scangle_it 3.486 r_scbond_it 3.073 r_rigid_bond_restr 2.511 r_mcangle_it 2.007 r_angle_refined_deg 1.589 r_dihedral_angle_4_deg 1.514 r_mcbond_it 1.387 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.273 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.114 r_chiral_restr 0.107 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 867 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 16
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling