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Crystal structure of inositol monophosphatase - II from Staphylococcus aureus MSSA476
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.3M Ammonium dihydrogen phosphate, 25% (w/v) PEG 3350, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.43 49.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 179.137 α = 90 b = 55.209 β = 124.33 c = 149.47 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 IMAGE PLATE RIGAKU RAXIS IV++ 2011-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.586 123.436 99 0.163 9.4 6.3 37905 37905
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.73 95.1 0.627 0.627 0.687 0.276 1.2 6 5275
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.59 19.74 37905 1899 98.99 0.1874 0.1831 0.2676 0.2403 RANDOM 30.198
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.75 -1.83 2.9 -3.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.458 r_dihedral_angle_3_deg 20.244 r_dihedral_angle_4_deg 17.059 r_dihedral_angle_1_deg 7.172 r_scangle_it 3.034 r_scbond_it 1.847 r_angle_refined_deg 1.666 r_mcangle_it 1.15 r_mcbond_it 0.615 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.458 r_dihedral_angle_3_deg 20.244 r_dihedral_angle_4_deg 17.059 r_dihedral_angle_1_deg 7.172 r_scangle_it 3.034 r_scbond_it 1.847 r_angle_refined_deg 1.666 r_mcangle_it 1.15 r_mcbond_it 0.615 r_chiral_restr 0.122 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8097 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 92
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling PHASER phasing