3SV0

Crystal structure of casein kinase-1 like protein in plant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION7.52980.1M HEPES sodium, 5%(v/v) 2-Propanol, 10%(w/v) Polyethylene glycol 4000, pH 7.5, EVAPORATION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.8433.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.828α = 90
b = 69.604β = 109.47
c = 55.849γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC QUANTUM 315r2011-05-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 4A0.999PAL/PLS4A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1250302648422
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12390

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT230.8325149133199.530.199450.196820.25019RANDOM35.642
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.01-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.461
r_dihedral_angle_4_deg19.368
r_dihedral_angle_3_deg17.989
r_dihedral_angle_1_deg6.132
r_scangle_it5.086
r_scbond_it3.277
r_mcangle_it2.119
r_angle_refined_deg2.059
r_mcbond_it1.227
r_chiral_restr0.134
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.461
r_dihedral_angle_4_deg19.368
r_dihedral_angle_3_deg17.989
r_dihedral_angle_1_deg6.132
r_scangle_it5.086
r_scbond_it3.277
r_mcangle_it2.119
r_angle_refined_deg2.059
r_mcbond_it1.227
r_chiral_restr0.134
r_bond_refined_d0.024
r_gen_planes_refined0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2424
Nucleic Acid Atoms
Solvent Atoms182
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
PHASESphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling