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Crystal structure of GlmU from Mycobacterium tuberculosis in complex with COENZYME A, GLUCOSAMINE 1-PHOSPHATE and URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 0.1M Tris-Cl, pH-8.5, 2% Tacsimate, 18% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.02 69.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.312 α = 90 b = 110.312 β = 90 c = 360.537 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARCCD 225 mirrors 2011-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97625 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 19.71 99.8 0.053 0.057 25.88 7.3 58954 58849 -3 30.049
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.04 99.2 0.307 0.33 6.26
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.98 19.71 58954 58765 1017 99.82 0.1681 0.1674 0.1692 0.2019 0.2035 RANDOM 26.3707
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.344 r_dihedral_angle_4_deg 23.483 r_dihedral_angle_3_deg 14.323 r_scangle_it 6.807 r_dihedral_angle_1_deg 6.516 r_scbond_it 4.324 r_angle_refined_deg 2.679 r_mcangle_it 2.653 r_mcbond_it 1.616 r_chiral_restr 0.393
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.344 r_dihedral_angle_4_deg 23.483 r_dihedral_angle_3_deg 14.323 r_scangle_it 6.807 r_dihedral_angle_1_deg 6.516 r_scbond_it 4.324 r_angle_refined_deg 2.679 r_mcangle_it 2.653 r_mcbond_it 1.616 r_chiral_restr 0.393 r_bond_refined_d 0.034 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3479 Nucleic Acid Atoms Solvent Atoms 529 Heterogen Atoms 107
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction