X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2HP7PDB ENTRIES 2HP7 AND 1LKV
experimental modelPDB 1LKVPDB ENTRIES 2HP7 AND 1LKV

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION6.50.1 M MES, pH 6.5, 10% dioxane, 1.6 M ammonium sulfate, EVAPORATION
Crystal Properties
Matthews coefficientSolvent content
4.4972.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.39α = 90
b = 91.39β = 90
c = 226.52γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE A10.97918CHESSA1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.526.2191.90.091920.513308133081178.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.53.6384.70.3584.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRIES 2HP7 AND 1LKV3.526.2112574127587.20.2530.2530.301RANDOM128.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
33.2133.21-66.42
RMS Deviations
KeyRefinement Restraint Deviation
c_scangle_it33.17
c_dihedral_angle_d24.7
c_scbond_it23.99
c_mcangle_it23.98
c_mcbond_it15.76
c_angle_deg1.6
c_improper_angle_d1.5
c_bond_d0.01
c_bond_d_na
c_bond_d_prot
RMS Deviations
KeyRefinement Restraint Deviation
c_scangle_it33.17
c_dihedral_angle_d24.7
c_scbond_it23.99
c_mcangle_it23.98
c_mcbond_it15.76
c_angle_deg1.6
c_improper_angle_d1.5
c_bond_d0.01
c_bond_d_na
c_bond_d_prot
c_angle_d
c_angle_d_na
c_angle_d_prot
c_angle_deg_na
c_angle_deg_prot
c_dihedral_angle_d_na
c_dihedral_angle_d_prot
c_improper_angle_d_na
c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4284
Nucleic Acid Atoms
Solvent Atoms1
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
PHASERphasing
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling