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The crystal structure of XMRV protease complexed with Amprenavir
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.75 293 3.5 M NaFormate, pH 4.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.83 32.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.572 α = 90 b = 65.099 β = 90 c = 69.161 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Mirror 2011-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 99.2 0.08 18.93 5.8 21645 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 96.2 0.64 2.1 4.6 2062
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.75 27.77 20457 1096 98.72 0.19062 0.18836 0.1882 0.23444 0.2321 RANDOM 36.497
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -1.26 1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.775 r_dihedral_angle_3_deg 16.122 r_dihedral_angle_4_deg 13.217 r_dihedral_angle_1_deg 7.068 r_scangle_it 5.884 r_scbond_it 3.848 r_mcangle_it 3.531 r_mcbond_it 2.091 r_angle_refined_deg 1.472 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.775 r_dihedral_angle_3_deg 16.122 r_dihedral_angle_4_deg 13.217 r_dihedral_angle_1_deg 7.068 r_scangle_it 5.884 r_scbond_it 3.848 r_mcangle_it 3.531 r_mcbond_it 2.091 r_angle_refined_deg 1.472 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1738 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 35
Software Software Software Name Purpose SERGUI data collection REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling REFMAC phasing