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Pre-cleavage Structure of the Autotransporter EspP - N1023D mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 294 18% w/v PEG8000, 20% v/v glycerol, 25 mM sodium acetate, pH 7.5, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.38 63.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.14 α = 90 b = 121.664 β = 90 c = 122.998 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD mirrors 2009-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.52 50 98.6 0.076 11.5 4.5 16621 16442 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.52 2.61 95.6 0.57 3.9 1577
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.52 30.42 16621 16400 840 98.67 0.2107 0.2082 0.2578 0.2678 RANDOM 69.9132
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.39 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.267 r_dihedral_angle_4_deg 17.337 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_1_deg 7.227 r_scangle_it 4.256 r_scbond_it 2.526 r_angle_refined_deg 1.82 r_mcangle_it 1.436 r_angle_other_deg 0.927 r_mcbond_it 0.744
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.267 r_dihedral_angle_4_deg 17.337 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_1_deg 7.227 r_scangle_it 4.256 r_scbond_it 2.526 r_angle_refined_deg 1.82 r_mcangle_it 1.436 r_angle_other_deg 0.927 r_mcbond_it 0.744 r_mcbond_other 0.143 r_chiral_restr 0.112 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2307 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 111
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection HKL-2000 data reduction HKL-2000 data scaling