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Crystal structure of 3B5H10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other A STRUCTURE DETERMINED FROM A SINGLE PT DERIVATIVE IN ANOTHER SPACE GROUP WAS USED AS THE PROBE MODEL FOR MOLECULAR REPLACEMENT.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 7% PEG 3350, 66MM CITRIC ACID, 2 MM TRIS, 5% V/V ETHYL ACETATE, PH 4.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 323K
Crystal Properties Matthews coefficient Solvent content 2.06 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.26 α = 90 b = 78.25 β = 90.23 c = 123.62 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 15 95.6 0.081 10.8 3.2 70733
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 79 0.236 5.2 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT A STRUCTURE DETERMINED FROM A SINGLE PT DERIVATIVE IN ANOTHER SPACE GROUP WAS USED AS THE PROBE MODEL FOR MOLECULAR REPLACEMENT. 1.9 11 52715 2826 100 0.187 0.183 0.1882 0.26 0.1925 RANDOM 17.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.26 0.21 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.293 r_dihedral_angle_4_deg 20.603 r_dihedral_angle_3_deg 15.753 r_dihedral_angle_1_deg 7.909 r_scangle_it 4.098 r_angle_other_deg 3.556 r_scbond_it 2.843 r_mcangle_it 1.922 r_angle_refined_deg 1.704 r_mcbond_it 1.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.293 r_dihedral_angle_4_deg 20.603 r_dihedral_angle_3_deg 15.753 r_dihedral_angle_1_deg 7.909 r_scangle_it 4.098 r_angle_other_deg 3.556 r_scbond_it 2.843 r_mcangle_it 1.922 r_angle_refined_deg 1.704 r_mcbond_it 1.182 r_nbd_other 0.495 r_nbtor_refined 0.303 r_nbtor_other 0.233 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.215 r_symmetry_vdw_refined 0.204 r_xyhbond_nbd_refined 0.2 r_chiral_restr 0.134 r_bond_other_d 0.132 r_mcbond_other 0.075 r_gen_planes_other 0.034 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6420 Nucleic Acid Atoms Solvent Atoms 890 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction XDS data scaling