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Structure of a putative uncharacterized protein from Mycobacterium abscessus ATCC 19977 / DSM 44196
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3QDF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 20% PEG 3350, 200mM potassium citrate, 29.18 mg/ml, cryoprotected with 25% ethylene glycol, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 4.05 69.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.14 α = 90 b = 94.951 β = 90 c = 173.408 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 50 99.9 0.086 10.5 6.4 62342
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.61 98.4 0.526 5.2 3030
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3QDF 1.58 41.78 62156 3149 99.55 0.1662 0.1653 0.1833 0.1951 RANDOM 20.6278
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.81 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.478 r_dihedral_angle_4_deg 14.382 r_dihedral_angle_3_deg 10.966 r_dihedral_angle_1_deg 6.556 r_scangle_it 2.945 r_scbond_it 1.715 r_angle_refined_deg 1.316 r_mcangle_it 1.186 r_angle_other_deg 0.84 r_mcbond_it 0.646
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.478 r_dihedral_angle_4_deg 14.382 r_dihedral_angle_3_deg 10.966 r_dihedral_angle_1_deg 6.556 r_scangle_it 2.945 r_scbond_it 1.715 r_angle_refined_deg 1.316 r_mcangle_it 1.186 r_angle_other_deg 0.84 r_mcbond_it 0.646 r_mcbond_other 0.128 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1875 Nucleic Acid Atoms Solvent Atoms 324 Heterogen Atoms 67
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction