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Crystal structure of the catalytic domain of FGFR2 kinase in complex with ARQ 069
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 15% polyethylene glycol 4000 and 0.3M lithium sulfate and 100 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.8 56.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.794 α = 90 b = 119.581 β = 90 c = 63.311 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 97.8 46498 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 20 44033 2356 97.76 0.21597 0.2143 0.2141 0.24746 0.2502 RANDOM 26.603
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 -0.15 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.265 r_dihedral_angle_4_deg 16.939 r_dihedral_angle_3_deg 13.803 r_dihedral_angle_1_deg 5.185 r_scangle_it 1.931 r_scbond_it 1.232 r_angle_refined_deg 1.008 r_mcangle_it 0.916 r_mcbond_it 0.549 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.265 r_dihedral_angle_4_deg 16.939 r_dihedral_angle_3_deg 13.803 r_dihedral_angle_1_deg 5.185 r_scangle_it 1.931 r_scbond_it 1.232 r_angle_refined_deg 1.008 r_mcangle_it 0.916 r_mcbond_it 0.549 r_nbtor_refined 0.299 r_nbd_refined 0.167 r_symmetry_vdw_refined 0.159 r_xyhbond_nbd_refined 0.127 r_symmetry_hbond_refined 0.093 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4469 Nucleic Acid Atoms Solvent Atoms 412 Heterogen Atoms 87
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling