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Monolignol O-methyltransferase (MOMT)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KYZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 295 26% PEG 4000, 0.3M magnesium nitrate,3% ethylene glycol, and 2 mM DTT
, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.13 42.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.241 α = 90 b = 150.754 β = 92.67 c = 68.302 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r MIRRORS 2010-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 97.1 0.11 2.6 103127
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 96.9 0.38 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1KYZ 1.9 44.37 96753 5092 97 0.19 0.188 0.1955 0.232 0.2355 RANDOM 31.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 -0.03 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.021 r_dihedral_angle_3_deg 17.766 r_dihedral_angle_4_deg 15.682 r_dihedral_angle_1_deg 6.463 r_scangle_it 6.412 r_scbond_it 4.012 r_mcangle_it 2.533 r_angle_refined_deg 2.106 r_mcbond_it 1.391 r_chiral_restr 0.158
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.021 r_dihedral_angle_3_deg 17.766 r_dihedral_angle_4_deg 15.682 r_dihedral_angle_1_deg 6.463 r_scangle_it 6.412 r_scbond_it 4.012 r_mcangle_it 2.533 r_angle_refined_deg 2.106 r_mcbond_it 1.391 r_chiral_restr 0.158 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10860 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement MOLREP phasing CNS refinement HKL-2000 data collection PROCESS data reduction HKL-3000 data scaling