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Crystal structure of sortaseC1 from Streptococcus suis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 0.1M Tris-HCL, 0.54M sodium citrate, 8% V/V iso-propanol, 8% V/V tert-butanol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.343 α = 90 b = 101.021 β = 90 c = 36.937 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS VII 2007-05-13 M SINGLE WAVELENGTH 2 2 x-ray IMAGE PLATE MAR scanner 345 mm plate 2007-07-30 MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418 2 SYNCHROTRON BSRF BEAMLINE 3W1A 0.97893, 0.98050, 0.90000 BSRF 3W1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.4 36.94 99.7 0.093 0.093 11.8 6.7 7851 7831 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.4 2.49 100 0.221 0.221 6.6 6.77 759
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 36.94 7831 7469 361 99.73 0.20873 0.20873 0.20628 0.2014 0.26104 0.253 RANDOM 19.091
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.02 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.612 r_dihedral_angle_3_deg 16.155 r_dihedral_angle_4_deg 15.498 r_dihedral_angle_1_deg 6.794 r_scangle_it 2.639 r_scbond_it 1.713 r_angle_refined_deg 1.54 r_mcangle_it 1.154 r_mcbond_it 0.711 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.612 r_dihedral_angle_3_deg 16.155 r_dihedral_angle_4_deg 15.498 r_dihedral_angle_1_deg 6.794 r_scangle_it 2.639 r_scbond_it 1.713 r_angle_refined_deg 1.54 r_mcangle_it 1.154 r_mcbond_it 0.711 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.303 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.097 r_symmetry_hbond_refined 0.074 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1414 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling