X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72970.1M Bis-Tris Propane pH 7.0, 2.5 M Ammonium Sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties
Matthews coefficientSolvent content
2.1743.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 101.435α = 90
b = 101.435β = 90
c = 88.936γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2010-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97912APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.84571.72599.90.09746.416.14047540445-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.8451.8899.90.747415.31967

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.84571.7254038040380202699.910.16430.16430.16220.2043RANDOM30.9778
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.4-1.42.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.692
r_dihedral_angle_4_deg15.77
r_dihedral_angle_3_deg13.961
r_dihedral_angle_1_deg5.44
r_scangle_it5.279
r_scbond_it3.379
r_mcangle_it2.263
r_rigid_bond_restr1.648
r_angle_refined_deg1.362
r_mcbond_it1.323
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.692
r_dihedral_angle_4_deg15.77
r_dihedral_angle_3_deg13.961
r_dihedral_angle_1_deg5.44
r_scangle_it5.279
r_scbond_it3.379
r_mcangle_it2.263
r_rigid_bond_restr1.648
r_angle_refined_deg1.362
r_mcbond_it1.323
r_chiral_restr0.095
r_bond_refined_d0.015
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3516
Nucleic Acid Atoms
Solvent Atoms322
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
MLPHAREphasing
DMphasing
SHELXDEphasing
RESOLVEphasing
ARP/wARPmodel building
Cootmodel building