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Structure of complement regulator Factor H mutant, T1184R.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BZM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 290 0.1M Tris HCl, pH 8.5 and 12% polyethylene glycol 8000 , VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.34 47.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.886 α = 90 b = 52.84 β = 90 c = 142.628 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 71.31 100 0.109 0.118 11.5 6.5 43524 1.52 1.52
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.56 100 0.681 0.769 2.1 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BZM 1.52 42.46 41260 2185 100 0.17922 0.17768 0.1757 0.20797 0.2059 RANDOM 16.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 0.07 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.048 r_dihedral_angle_4_deg 18.465 r_dihedral_angle_3_deg 14.386 r_dihedral_angle_1_deg 7.015 r_scangle_it 6.346 r_scbond_it 3.804 r_mcangle_it 2.39 r_angle_refined_deg 2.372 r_mcbond_it 1.455 r_chiral_restr 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.048 r_dihedral_angle_4_deg 18.465 r_dihedral_angle_3_deg 14.386 r_dihedral_angle_1_deg 7.015 r_scangle_it 6.346 r_scbond_it 3.804 r_mcangle_it 2.39 r_angle_refined_deg 2.372 r_mcbond_it 1.455 r_chiral_restr 0.305 r_bond_refined_d 0.028 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2028 Nucleic Acid Atoms Solvent Atoms 399 Heterogen Atoms 6
Software Software Software Name Purpose DNA data collection PHASES phasing REFMAC refinement MOSFLM data reduction SCALA data scaling