3R46

Crystal structure of a parallel 6-helix coiled coil CC-hex-D24


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2911.5 M sodium chloride, 10% v/v ethanol, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.6453.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.176α = 90
b = 55.176β = 90
c = 146.591γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152010-07-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.9795DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7530990.08137.923.723735
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8190.30.5762.48.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3R3K WITH IODOPHENYL CHANGED TO TRYOSINE1.7513023338119698.440.2010.19930.234RANDOM23.6852
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.960.96-1.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.808
r_dihedral_angle_3_deg13.539
r_scangle_it6.007
r_dihedral_angle_1_deg3.986
r_scbond_it3.44
r_mcangle_it1.906
r_angle_refined_deg1.485
r_mcbond_it1.101
r_chiral_restr0.11
r_bond_refined_d0.019
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.808
r_dihedral_angle_3_deg13.539
r_scangle_it6.007
r_dihedral_angle_1_deg3.986
r_scbond_it3.44
r_mcangle_it1.906
r_angle_refined_deg1.485
r_mcbond_it1.101
r_chiral_restr0.11
r_bond_refined_d0.019
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1368
Nucleic Acid Atoms
Solvent Atoms221
Heterogen Atoms17

Software

Software
Software NamePurpose
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling